P. Aghion, P. W. Howitt, P. Howitt, M. Brant-collett, and C. García-peñalosa, Endogenous growth theory, 1998.

P. M. Allen, Cities and regions as self-organizing systems: models of complexity, 2012.

P. M. Allen and M. Sanglier, Urban evolution, self-organization, and decisionmaking, Environment and Planning A, vol.13, issue.2, pp.167-183, 1981.

F. Amblard, Comprendre le fonctionnement de simulations sociales individus-centrées: Applicationà des modèles de dynamiques d'opinions, 2003.

R. C. Aster, B. Borchers, and C. H. Thurber, Parameter estimation and inverse problems, vol.4, 1985.

A. Banos, Pour des pratiques de modélisation et de simulation libérées en géographie et SHS, 2013.

A. Banos, Knowledge accelerator' in geography and social sciences: Further and faster, but also deeper and wider, Urban Dynamics and Simulation Models, pp.119-123, 2017.

M. Batty, Urban analytics defined, 2019.

A. Bonnafous and F. Plassard, Les méthodologies usuelles de l'étude des effets structurants de l'offre de transport, Revueéconomique, vol.25, issue.25, pp.208-232, 1974.

A. Bretagnolle and A. Franc, Peupler la terre: De la préhistoire l'ère des métropoles, 2018.

A. Bretagnolle and D. Pumain, Simulating urban networks through multiscalar space-time dynamics: Europe and the united states, 17th-20th centuries, Urban Studies, vol.47, issue.13, pp.2819-2839, 2010.

S. Bura, F. Guérin-pace, H. Mathian, D. Pumain, and L. Sanders, Multiagent systems and the dynamics of a settlement system, Geographical analysis, vol.28, issue.2, pp.161-178, 1996.

F. Castiglione, F. Pappalardo, M. Bernaschi, and S. Motta, Optimization of haart with genetic algorithms and agent-based models of hiv infection, Bioinformatics, vol.23, issue.24, pp.3350-3355, 2007.

G. Chérel, C. Cottineau, R. , and R. , Beyond corroboration: Strengthening model validation by looking for unexpected patterns, PLoS ONE, vol.10, issue.9, p.138212, 2015.

M. Clarke and A. G. Wilson, The dynamics of urban spatial structure: progress and problems, Journal of regional science, vol.23, issue.1, pp.1-18, 1983.

A. D. Cliff, P. Haggett, and M. Smallman-raynor, World atlas of epidemic diseases, 2004.

C. Cottineau, R. Reuillon, P. Chapron, S. Rey-coyrehourcq, and D. Pumain, A modular modelling framework for hypotheses testing in the simulation of urbanisation, Systems, vol.3, issue.4, pp.348-377, 2015.

K. Csilléry, M. G. Blum, O. E. Gaggiotti, and O. François, Approximate bayesian computation (abc) in practice, Trends in ecology & evolution, vol.25, issue.7, pp.410-418, 2010.

G. Deffuant, F. Amblard, R. Duboz, and E. Ramat, Une démarche expérimentale pour la simulation individus-centrée, Actes des 10èmes Journées de Rochebrune, rencontres interdisciplinaires sur les systèmes complexes naturels et artificiels, statutépistémologique de la simulation, pp.45-64, 2003.

J. Demoule, D. Garcia, and A. Schnapp, Une histoire des civilisations, 2018.

D. Pietro, A. While, L. Barone, and L. , Applying evolutionary algorithms to problems with noisy, timeconsuming fitness functions, Proceedings of the 2004 Congress on Evolutionary Computation, vol.2, pp.1254-1261, 2004.

R. Duboz, D. Versmisse, M. Travers, E. Ramat, and Y. Shin, Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model, Ecological modelling, vol.221, issue.5, pp.840-849, 2010.

G. Dupuy and L. G. Benguigui, Sciences urbaines: interdisciplinarités passive, naïve, transitive, offensive. Métropoles, 2015.

E. Eliot and É. Daudé, Diffusion desépidémies et complexités géographiques. perspectives conceptuelles et méthodologiques. Espace populations sociétés. Space populations societies, pp.403-416, 2006.

J. M. Epstein and R. Axtell, Growing artificial societies: social science from the bottom up, 1996.

O. B. Espinosa, A genetic algorithm for the calibration of a micro-simulation model, 2012.

S. Eubank, H. Guclu, V. A. Kumar, M. V. Marathe, A. Srinivasan et al., Modelling disease outbreaks in realistic urban social networks, Nature, vol.429, issue.6988, p.180, 2004.

J. Favaro and D. Pumain, Gibrat revisited: An urban growth model incorporating spatial interaction and innovation cycles, Geographical Analysis, vol.43, issue.3, pp.261-286, 2011.

R. Fletcher, Settlement archaeology: World-wide comparisons, World Archaeology, vol.18, issue.1, pp.59-83, 1986.

R. Gibrat, Les inégalitéséconomiques: Applications... d'une loi nouvelle, la loi de l'effet proportionnel, 1931.

J. Gleyze, La vulnérabilité structurelle des réseaux de transport dans un contexte de risques, 2005.

A. Grignard, P. Taillandier, B. Gaudou, D. A. Vo, N. Q. Huynh et al., Gama 1.6: Advancing the art of complex agent-based modeling and simulation, International Conference on Principles and Practice of Multi-Agent Systems, pp.117-131, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01124407

V. Grimm, E. Revilla, U. Berger, F. Jeltsch, W. M. Mooij et al., Pattern-oriented modeling of agent-based complex systems: lessons from ecology, science, vol.310, issue.5750, pp.987-991, 2005.

T. Hagerstrand, Migration and area: migration in sweden: Lund studies in geography, series b. Human Geography, p.13, 1957.

A. J. Heppenstall, A. J. Evans, and M. H. Birkin, Genetic algorithm optimisation of an agent-based model for simulating a retail market, Environment and Planning B: Planning and Design, vol.34, issue.6, pp.1051-1070, 2007.

L. Hung, D. Kristiyanto, S. B. Lee, and K. Y. Yeung, Guidock: using docker containers with a common graphics user interface to address the reproducibility of research, PloS one, vol.11, issue.4, p.152686, 2016.

P. Jensen, Pourquoi la société ne se laisse pas mettre enéquations, 2018.

G. M. Kurtzer, V. Sochat, and M. W. Bauer, Singularity: Scientific containers for mobility of compute, PloS one, vol.12, issue.5, p.177459, 2017.

M. Lenormand, F. Jabot, and G. Deffuant, Adaptive approximate bayesian computation for complex models, Computational Statistics, vol.28, issue.6, pp.2777-2796, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00638484

L. Liu, Settlement patterns, chiefdom variability, and the development of early states in north china, Journal of anthropological archaeology, vol.15, issue.3, pp.237-288, 1996.

I. S. Lowry, A model of metropolis, 1964.

J. Marcus and J. A. Sabloff, The ancient city: New perspectives on urbanism in the old and new world, 2008.

F. Moriconi-ebrard, L'urbanisation du monde de 1950à 1990 d'après une définition harmonisée des agglomérations urbaines, 1993.

R. L. Morrill, The development of models of migration and the role of electronic processing machines, J. Sutter. Entret. Monaco Sc. Hum. I, p.213, 1962.

R. L. Morrill, The distribution of migration distances, Papers of the Regional Science Association, vol.11, pp.73-84, 1963.

M. Odersky and M. Zenger, Scalable component abstractions, ACM Sigplan Notices, vol.40, pp.41-57, 2005.

J. Offner, Les "effets structurants" du transport: mythe politique, mystification scientifique. L'espace géographique, pp.233-242, 1993.

J. Offner, F. Beaucire, M. Delaplace, A. Frémont, O. Ninot et al., Les effets structurants des infrastructures de transport, Espace Geographique, vol.43, issue.1, p.51, 2014.
URL : https://hal.archives-ouvertes.fr/halshs-01515710

B. C. Oliveira and J. Gibbons, Scala for generic programmers: comparing haskell and scala support for generic programming, Journal of functional programming, vol.20, issue.3-4, pp.303-352, 2010.

J. Passerat-palmbach, R. Reuillon, M. Leclaire, A. Makropoulos, E. C. Robinson et al., Reproducible large-scale neuroimaging studies with the openmole workflow management system, Frontiers in neuroinformatics, vol.11, p.21, 2017.

C. Piou, U. Berger, and V. Grimm, Proposing an information criterion for individual-based models developed in a pattern-oriented modelling framework, Ecological Modelling, vol.220, issue.17, pp.1957-1967, 2009.

D. Pumain, Pour une théorieévolutive des villes. L'Espace géographique, pp.119-134, 1997.

D. Pumain, The socio-spatial dynamics of systems of cities and innovation processes: a multi-level model, The Dynamics of Complex Urban Systems, pp.373-389, 2008.

D. Pumain, Complexity in geography. Geographical Modeling, pp.1-30, 2019.

D. Pumain and R. Reuillon, Urban dynamics and simulation models, 2017.
URL : https://hal.archives-ouvertes.fr/halshs-02008924

J. Raimbault, An applied knowledge framework to study complex systems, Complex Systems Design & Management, pp.31-45, 2017.
URL : https://hal.archives-ouvertes.fr/halshs-01662219

J. Raimbault, Identification de causalites dans des donnees spatio-temporelles, Spatial Analysis and GEOmatics, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01650531

J. Raimbault, Indirect evidence of network effects in a system of cities. Environment and Planning B: Urban Analytics and City Science, p.2399808318774335, 2018.
URL : https://hal.archives-ouvertes.fr/halshs-01788559

J. Raimbault, Modélisation des interactions entre réseaux de transport et territoires: une approche par la co-évolution, JJC Pacte-Citeres-Les capacités transformatives des réseaux dans la fabrique des territoires, 2018.

J. Raimbault, Unveiling co-evolutionary patterns in systems of cities: a systematic exploration of the simpopnet model, 2018.

J. Raimbault, Modeling the co-evolution of cities and networks, 2019.

J. Raimbault, C. Cottineau, M. Le-texier, F. Le-nechet, R. et al., Space matters: Extending sensitivity analysis to initial spatial conditions in geosimulation models, Journal of Artificial Societies and Social Simulation, vol.22, issue.4, p.10, 2019.
URL : https://hal.archives-ouvertes.fr/halshs-02353359

J. Raimbault, C. Cottineau, M. L. Texier, F. L. Néchet, R. et al., Space matters: extending sensitivity analysis to initial spatial conditions in geosimulation models, 2018.
URL : https://hal.archives-ouvertes.fr/halshs-02353359

J. Raimbault and J. Perret, Generating urban morphologies at large scales, 2019.
URL : https://hal.archives-ouvertes.fr/halshs-02265415

P. Rakshit, A. Konar, and S. Das, Noisy evolutionary optimization algorithms-a comprehensive survey, Swarm and Evolutionary Computation, vol.33, pp.18-45, 2017.

R. Reuillon, F. Chuffart, M. Leclaire, T. Faure, N. Dumoulin et al., Declarative task delegation in openmole, 2010 International Conference on High Performance Computing & Simulation, pp.55-62, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02076240

R. Reuillon, M. Leclaire, and S. Rey-coyrehourcq, Openmole, a workflow engine specifically tailored for the distributed exploration of simulation models, Future Generation Computer Systems, vol.29, issue.8, pp.1981-1990, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00840744

R. Reuillon, C. Schmitt, R. De-aldama, and J. Mouret, A new method to evaluate simulation models: The calibration profile (cp) algorithm, Journal of Artificial Societies and Social Simulation, vol.18, issue.1, p.12, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01118936

S. Rey-coyrehourcq, Une plateforme intégrée pour la construction et l'évaluation de modèles de simulation en géographie, vol.1, 2015.

H. Reymond, Pour une problmatique thorique, Problématiques de la géographie, vol.29, 1971.

R. Rist, Student social class and teacher expectations: The self-fulfilling prophecy in ghetto education, Harvard educational review, vol.40, issue.3, pp.411-451, 1970.

H. D. Rozenfeld, D. Rybski, J. S. Andrade, M. Batty, H. E. Stanley et al., Laws of population growth, Proceedings of the National Academy of Sciences, vol.105, issue.48, pp.18702-18707, 2008.

L. Sanders, J. Favaro, B. Glisse, H. Mathian, and D. Pumain, Artificial intelligence and collective agents: the eurosim model, Cybergeo, vol.392, p.15, 2007.

L. Sanders, D. Pumain, H. Mathian, F. Guérin-pace, and S. Bura, Simpop: a multiagent system for the study of urbanism, Environment and Planning B: Planning and design, vol.24, issue.2, pp.287-305, 1997.
URL : https://hal.archives-ouvertes.fr/hal-01524134

C. Schmitt, Modélisation de la dynamique des systèmes de peuplement: de SimpopLocalà SimpopNet, 2014.

C. Schmitt, S. Rey-coyrehourcq, D. Pumain, R. , and R. , The simpoplocal model, Urban Dynamics and Simulation Models, pp.21-35, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01118918

C. Schmitt, S. Rey-coyrehourcq, R. Reuillon, and D. Pumain, Half a billion simulations: Evolutionary algorithms and distributed computing for calibrating the simpoplocal geographical model. Environment and Planning B: Planning and Design, vol.42, pp.300-315, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01118918

S. Sharma and H. Singh, Multi-agent system for simulating human behavior in egress simulations, Proceedings of NAACSOS, Annual Conference of the North American Association for computational social and organizational sciences, 2006.

T. Sloane, Experiences with domain-specific language embedding in scala, Domain-Specific Program Development, p.7, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00350269

D. Solomatine, Y. Dibike, and N. Kukuric, Automatic calibration of groundwater models using global optimization techniques, Hydrological Sciences Journal, vol.44, issue.6, pp.879-894, 1999.

F. Stonedahl and U. Wilensky, Evolutionary robustness checking in the artificial anasazi model, AAAI Fall Symposium Series, 2010.

F. J. Stonedahl, Genetic algorithms for the exploration of parameter spaces in agent-based models, 2011.

C. Terrier, Mirabelle. Courrier des Statistiques, p.73, 1980.

S. Tisue and U. Wilensky, Netlogo: A simple environment for modeling complexity, International conference on complex systems, vol.21, pp.16-21, 2004.

A. Van-deursen and P. Klint, Domain-specific language design requires feature descriptions, Journal of Computing and Information Technology, vol.10, issue.1, pp.1-17, 2002.

R. White and G. Engelen, Cellular automata and fractal urban form: a cellular modelling approach to the evolution of urban land-use patterns, Environment and planning A, vol.25, issue.8, pp.1175-1199, 1993.

R. White, G. Engelen, and I. Uljee, Modeling cities and regions as complex systems: From theory to planning applications, 2015.

A. G. Wilson, Complex spatial systems: the modelling foundations of urban and regional analysis, 2014.