Genetic structure of the purebred domestic dog, Science, vol.304, pp.1160-1164, 2004. ,
Studies on early dog remains from Northern Europe, J. Archaeol. Sci, vol.14, pp.31-49, 1987. ,
A wolf in dog's clothing: initial dog domestication and Pleistocene wolf variation, J. Archaeol. Sci, vol.68, pp.1-4, 2016. ,
Domestication and uses of the dog in western Europe from the Paleolithic to the Iron Age, Anim. Front, vol.4, pp.23-31, 2014. ,
Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs, Science, vol.342, pp.871-874, 2013. ,
Genetic evidence for an East Asian origin of domestic dogs, Science, vol.298, pp.1610-1613, 2002. ,
Out of southern East Asia: the natural history of domestic dogs across the world, Cell Res, vol.26, pp.21-33, 2016. ,
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication, Nature, vol.464, pp.898-902, 2010. ,
URL : https://hal.archives-ouvertes.fr/inserm-00466086
Genetic structure in village dogs reveals a Central Asian domestication origin, Proc. Natl Acad. Sci. USA, vol.112, pp.13639-13644, 2015. ,
Erneute Gedanken zur Benennung der neolitischen Perioden, Germania, vol.74, pp.233-237, 1996. ,
Ancient DNA supports lineage replacement in European dog gene pool: insight into Neolithic southeast France, J. Archaeol. Sci, vol.36, pp.513-519, 2009. ,
URL : https://hal.archives-ouvertes.fr/halshs-00458905
Genomic and archaeological evidence suggest a dual origin of domestic dogs, Science, vol.352, pp.1228-1231, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01326370
Massive migration from the steppe was a source for IndoEuropean languages in Europe, Nature, vol.522, pp.207-211, 2015. ,
Tote Menschen und Tiere in finsteren Felsschächteny' -neue Dokumentationsmethodik und erste Untersuchungsergebnisse zur Kirschbaumhöhle in Oberfranken, Praehistorische Zeitschrift, vol.90, pp.214-244, 2015. ,
mapDamage: testing for damage patterns in ancient DNA sequences, Bioinformatics, vol.27, pp.2153-2155, 2011. ,
Patterns of damage in genomic DNA sequences from a Neandertal, Proc. Natl Acad. Sci. USA, vol.104, pp.14616-14621, 2007. ,
Early farmers from across Europe directly descended from Neolithic Aegeans, Proc. Natl Acad. Sci. USA, vol.113, pp.6886-6891, 2016. ,
On the origin of mongrels: evolutionary history of free-breeding dogs in Eurasia, Proc. Biol. Sci, vol.282, p.20152189, 2015. ,
Complete mitochondrial genome database and standardized classification system for Canis lupus familiaris, Forensic Sci. Int. Genet, vol.19, pp.123-129, 2015. ,
Rethinking dog domestication by integrating genetics, archeology, and biogeography, Proc. Natl Acad. Sci. USA, vol.109, pp.8878-8883, 2012. ,
The genome of a Late Pleistocene human from a Clovis burial site in western Montana, Nature, vol.506, pp.225-229, 2014. ,
Ancient admixture in human history, Genetics, vol.192, pp.1065-1093, 2012. ,
Efficient moment-based inference of admixture parameters and sources of gene flow, Mol. Biol. Evol, vol.30, pp.1788-1802, 2013. ,
A spatial framework for understanding population structure and admixture, PLoS Genet, vol.12, p.1005703, 2016. ,
Bayesian inference of ancient human demography from individual genome sequences, Nat. Genet, vol.43, pp.1031-1034, 2011. ,
Genome sequencing highlights the dynamic early history of dogs, PLoS Genet, vol.10, p.1004016, 2014. ,
Worldwide patterns of genomic variation and admixture in gray wolves, Genome Res, vol.26, pp.163-173, 2016. ,
Ancient wolf genome reveals an early divergence of domestic dog ancestors and admixture into highlatitude breeds, Curr. Biol, vol.25, pp.1515-1519, 2015. ,
Modeling human population separation history using physically phased genomes, Genetics, vol.205, pp.385-395, 2017. ,
The genomic signature of dog domestication reveals adaptation to a starch-rich diet, Nature, vol.495, pp.360-364, 2013. ,
Amylase activity is associated with AMY2B copy numbers in dog: implications for dog domestication, diet and diabetes, Anim. Genet, vol.45, pp.716-722, 2014. ,
Dietary variation and evolution of gene copy number among dog breeds, PLoS ONE, vol.11, p.148899, 2016. ,
Molecular and evolutionary history of melanism in North American gray wolves, Science, vol.323, pp.1339-1343, 2009. ,
Diet adaptation in dog reflects spread of prehistoric agriculture, Heredity, vol.117, pp.301-306, 2016. ,
Population genomics of Bronze Age Eurasia, Nature, vol.522, pp.167-172, 2015. ,
Bayesian analysis of radiocarbon dates, Radiocarbon, vol.51, pp.337-360, 2009. ,
IntCal13 and marine13 radiocarbon age calibration curves 0-50,000 years cal BP, Radiocarbon, vol.55, pp.1869-1887, 2013. ,
The extraction and analysis of ancient DNA from bone and teeth: a survey of current methodologies, Anc. Biomol, vol.3, pp.81-102, 2000. ,
Genome flux and stasis in a five millennium transect of European prehistory, Nat. Commun, vol.5, p.5257, 2014. ,
Genetic discontinuity between local hunter-gatherers and central Europe's first farmers, Science, vol.326, pp.137-140, 2009. ,
The genetic prehistory of domesticated cattle from their origin to the spread across Europe, BMC Genet, vol.16, p.54, 2015. ,
Analysis of high-throughput ancient DNA sequencing data, Methods Mol. Biol, vol.840, pp.197-228, 2012. ,
Fast and accurate long-read alignment with BurrowsWheeler transform, Bioinformatics, vol.26, pp.589-595, 2010. ,
A framework for variation discovery and genotyping using next-generation DNA sequencing data, Nat. Genet, vol.43, pp.491-498, 2011. ,
MEGA6: molecular evolutionary genetics analysis version 6.0, Mol. Biol. Evol, vol.30, pp.2725-2729, 2013. ,
APE: analyses of phylogenetics and evolution in R language, Bioinformatics, vol.20, pp.289-290, 2004. ,
URL : https://hal.archives-ouvertes.fr/ird-01887318
Population structure and eigenanalysis, PLoS Genet, vol.2, p.190, 2006. ,
Fast model-based estimation of ancestry in unrelated individuals, Genome Res, vol.19, pp.1655-1664, 2009. ,
Estimating individual admixture proportions from next generation sequencing data, Genetics, vol.195, pp.693-702, 2013. ,
Upper Palaeolithic genomes reveal deep roots of modern Eurasians, Nat. Commun, vol.6, p.8912, 2015. ,
Genetic recombination is targeted towards gene promoter regions in dogs, PLoS Genet, vol.9, p.1003984, 2013. ,
Principal components analysis corrects for stratification in genome-wide association studies, Nat. Genet, vol.38, pp.904-909, 2006. ,
Matrix2png: a utility for visualizing matrix data, Bioinformatics, vol.19, pp.295-296, 2003. ,
Diversity of human copy number variation and multicopy genes, Science, vol.330, pp.641-646, 2010. ,
Personalized copy number and segmental duplication maps using next-generation sequencing, Nat. Genet, vol.41, pp.1061-1067, 2009. ,
mrsFAST: a cache-oblivious algorithm for short-read mapping, Nat. Methods, vol.7, pp.576-577, 2010. ,
, CodeX Project No: 295729. Laura Botigué is supported by the Beatriu de Pinós Fellowship, from Generalitat de Catalunya. S.G. was supported by a Boehringer Ingelheim Fonds Travel award